PBD

Statistics

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Genome Information

GenomeLevelTotal SizeSeqNumMaxLenN50GeNumAvgTrAvgCDSTEGC
Citrus australasica v1.0contig358,023,46533410,663,8821,859,41931,6471,768.11,169.055.6834.30
Citrus clementina v1.0scaffold301,386,9981,39851,050,27931,410,90124,5331,707.61,242.544.6734.23
Fortunella hindsii v1.0contig373,557,5691,22611,998,0492,209,46432,2572,330.91,268.043.6034.49
Citrus hongheensis v1.0contig355,123,1636538,340,1552,606,25630,5251,787.11,165.254.0834.47
Atalantia buxifolia v1.0scaffold315,820,82125,6007,163,4231,073,98828,4122,242.51,232.543.5530.72
Atalantia buxifolia v2.0chromosome304,232,25743154,510,00032,240,16026,0211,922.11,245.749.1233.91
Citrus grandis (L.) Osbeck.cv.'Wanbaiyou'v1.0chromosome345,779,9821053,007,17040,395,59930,1231,571.81,141.145.8334.90
Murraya paniculata v1.0scaffold217,786,5882609,251,8032,450,84022,8561,892.61,294.337.9134.18
Citrus reticulata v1.0scaffold347,457,50890,1398,970,6951,585,53228,8334,005.81,210.850.0533.91
Citrus reticulata v2.0chromosome336,493,7341050,934,81032,372,00027,3801,976.41,241.755.9836.62
Citrus linwuensis v1.0contig392,845,82559925,737,9564,257,09931,4131,949.21,197.360.4438.96
Citrus mangshanensis v1.0contig370,986,45137618,367,4013,582,87828,1811,904.51,213.358.2237.53
Citrus reticulata Blanco cv. Ponkan v1.0chromosome359,891,19235454,428,67936,857,22929,5702,084.31,255.554.9834.23
Citrus medica v1.0scaffold406,057,94732,7322,443,612369,52732,5791,758.21,154.243.8032.00
Citrus medica v2.0contig392,666,16431824,033,3529,664,13027,0582,028.71,240.262.2137.17
Citrus sinensis v1.0chromosome327,944,6701088,947,45130,837,05329,6551,817.01,254.620.4931.28
Citrus sinensis v2.0chromosome338,409,2501068,303,55432,636,37529,1382,166.51,309.748.1035.46
Citrus sinensis v3.0chromosome336,647,2851050,232,14232,431,06629,8752,007.91,199.941.1236.87
Citrus grandis (L.) Osbeck.cv.'Majiayou' v1.0contig354,961,5485379,262,2781,565,24927,8272,109.31,204.254.8234.08
Citrus ichangensis v1.0scaffold357,621,24614,9162,984,400501,43532,0671,562.71,106.339.3132.08
Citrus ichangensis v2.0contig364,697,53050621,638,2655,250,82329,4511,919.51,193.957.0736.48
Poncirus trifoliata v1.0chromosome303,115,4551072,171,87330,282,83725,6802,086.51,296.646.4934.12
Citrus grandis (L.) Osbeck.cv.'Zipiyou' v1.0chromosome365,523,29230251,892,54931,181,56629,0131,845.21,170.258.5836.59

Number of Samples about Gene Expression

SpeciesPublished DataUnpublished DataTotal
Citrus clementina v1.07440114
Atalantia buxifolia v1.001818
Citrus grandis (L.) Osbeck.cv.'Wanbaiyou' v1.010469173
Citrus sinensis v2.020496300
Citrus ichangensis v1.0066
Citrus medica v1.0151631
Poncirus trifoliata v1.0222446
Fortunella hindsii v1.0707
Malus domestica78078
Vitis vinifera100101001
Prunus persica45045
Fragaria Ananassa44044
Solanum lycopersicum217502175
Total37692694038

Number of Variation Positions

ChrSWO_SNP&IndelSWO_SNPSWO_FrqHWB_SNP&IndelHWB_SNPHWB_Frq
chr12,535,3182,338,2131,796,1162,556,3792,352,7031,810,990
chr22,883,1452,662,7972,063,4524,197,3243,871,9963,002,334
chr33,003,2272,770,0732,129,5232,279,5932,095,1021,609,740
chr42,381,3152,198,8951,688,7562,260,6252,080,3601,606,934
chr53,298,2283,040,8252,353,7353,879,3303,568,4302,764,129
chr61,877,4411,733,6551,329,8771,973,1071,815,1121,406,338
chr72,713,0152,509,0501,951,5191,885,2621,731,7071,342,446
chr82,032,6931,876,9571,455,1241,668,6771,532,4951,185,417
chr92,091,6341,932,6391,494,3572,562,4462,363,1241,827,858
chrUn2,335,4782,171,2971,045,204983,340914,859720,700

Number of Subgroups

SubgroupsNumber
Atalantia15
Citron9
Mandarin37
Papeda12
Pummelo21
Sour orange20
Sweet orange31
Others22
Total167