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Genome Wide Association Tool
(
GAPIT
is adopted)
(Page View: 3994)
Phenotypic File
Genotypic File
(Hapmat Format)
Genotypic File
(Numeric Format)
GD
GM
User-inputted
Kinship
CV
Model
Blink (Default)
GLM
MLM
CMLM
MLMM
SUPER
FarmCPU
gBLUP
cBLUP
sBLUP
Model Selection
Multiple Analysis
PCA.total
0 (Default)
1
2
3
4
5
kinship.algorithm
VanRaden (Default)
Zhang
Loiselle
EMMA
kinship.cluster
average (Default)
complete
ward
single
mcquitty
median
centroid
About
kinship.group
Mean (Default)
Max
Min
Median
or
Custom Parameters
myGAPIT<-GAPIT(Y=myY,G=myG,GD=myGD,GM=myGM,KI=myKI,CV=myCV,model="GLM",PCA.total=3,...)
Demo