Pathway  (All the pathways are obtained from KEGG)

1. Metabolism

1.1 Carbohydrate metabolism

00010 Glycolysis / Gluconeogenesis
00020 Citrate cycle (TCA cycle)
00030 Pentose phosphate pathway
00040 Pentose and glucuronate interconversions
00051 Fructose and mannose metabolism
00052 Galactose metabolism
00053 Ascorbate and aldarate metabolism
00500 Starch and sucrose metabolism
00520 Amino sugar and nucleotide sugar metabolism
00620 Pyruvate metabolism
00630 Glyoxylate and dicarboxylate metabolism
00640 Propanoate metabolism
00650 Butanoate metabolism
00660 C5-Branched dibasic acid metabolism
00562 Inositol phosphate metabolism

1.2 Energy metabolism

00190 Oxidative phosphorylation
00195 Photosynthesis
00196 Photosynthesis - antenna proteins
00710 Carbon fixation in photosynthetic organisms
00720 Carbon fixation pathways in prokaryotes
00680 Methane metabolism
00910 Nitrogen metabolism
00920 Sulfur metabolism

1.3 Lipid metabolism

00061 Fatty acid biosynthesis
00062 Fatty acid elongation
00071 Fatty acid metabolism
00072 Synthesis and degradation of ketone bodies
00073 Cutin, suberine and wax biosynthesis
00100 Steroid biosynthesis
00120 Primary bile acid biosynthesis
00140 Steroid hormone biosynthesis
00561 Glycerolipid metabolism
00564 Glycerophospholipid metabolism
00565 Ether lipid metabolism
00600 Sphingolipid metabolism
00590 Arachidonic acid metabolism
00591 Linoleic acid metabolism
00592 alpha-Linolenic acid metabolism
01040 Biosynthesis of unsaturated fatty acids

1.4 Nucleotide metabolism

00230 Purine metabolism
00240 Pyrimidine metabolism

1.5 Amino acid metabolism

00250 Alanine, aspartate and glutamate metabolism
00260 Glycine, serine and threonine metabolism
00270 Cysteine and methionine metabolism
00280 Valine, leucine and isoleucine degradation
00290 Valine, leucine and isoleucine biosynthesis
00300 Lysine biosynthesis
00310 Lysine degradation
00330 Arginine and proline metabolism
00340 Histidine metabolism
00350 Tyrosine metabolism
00360 Phenylalanine metabolism
00380 Tryptophan metabolism
00400 Phenylalanine, tyrosine and tryptophan biosynthesis

1.6 Metabolism of other amino acids

00410 beta-Alanine metabolism
00430 Taurine and hypotaurine metabolism
00440 Phosphonate and phosphinate metabolism
00450 Selenocompound metabolism
00460 Cyanoamino acid metabolism
00471 D-Glutamine and D-glutamate metabolism
00480 Glutathione metabolism

1.7 Glycan biosynthesis and metabolism

00510 N-Glycan biosynthesis
00513 Various types of N-glycan biosynthesis
00512 Mucin type O-Glycan biosynthesis
00514 Other types of O-glycan biosynthesis
00532 Glycosaminoglycan biosynthesis - CS/DS
00534 Glycosaminoglycan biosynthesis - HS/Hep
00531 Glycosaminoglycan degradation
00563 Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
00603 Glycosphingolipid biosynthesis - globo series
00604 Glycosphingolipid biosynthesis - ganglio series
00540 Lipopolysaccharide biosynthesis
00550 Peptidoglycan biosynthesis
00511 Other glycan degradation

1.8 Metabolism of cofactors and vitamins

00730 Thiamine metabolism
00740 Riboflavin metabolism
00750 Vitamin B6 metabolism
00760 Nicotinate and nicotinamide metabolism
00770 Pantothenate and CoA biosynthesis
00780 Biotin metabolism
00785 Lipoic acid metabolism
00790 Folate biosynthesis
00670 One carbon pool by folate
00830 Retinol metabolism
00860 Porphyrin and chlorophyll metabolism
00130 Ubiquinone and other terpenoid-quinone biosynthesis

1.9 Metabolism of terpenoids and polyketides

00900 Terpenoid backbone biosynthesis
00902 Monoterpenoid biosynthesis
00909 Sesquiterpenoid and triterpenoid biosynthesis
00904 Diterpenoid biosynthesis
00906 Carotenoid biosynthesis
00905 Brassinosteroid biosynthesis
00908 Zeatin biosynthesis
00903 Limonene and pinene degradation
00281 Geraniol degradation
00253 Tetracycline biosynthesis
00523 Polyketide sugar unit biosynthesis

1.10 Biosynthesis of other secondary metabolites

00940 Phenylpropanoid biosynthesis
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
00941 Flavonoid biosynthesis
00944 Flavone and flavonol biosynthesis
00950 Isoquinoline alkaloid biosynthesis
00960 Tropane, piperidine and pyridine alkaloid biosynthesis
00232 Caffeine metabolism
00965 Betalain biosynthesis
00966 Glucosinolate biosynthesis
00521 Streptomycin biosynthesis
00401 Novobiocin biosynthesis

1.11 Xenobiotics biodegradation and metabolism

00362 Benzoate degradation
00627 Aminobenzoate degradation
00364 Fluorobenzoate degradation
00625 Chloroalkane and chloroalkene degradation
00361 Chlorocyclohexane and chlorobenzene degradation
00623 Toluene degradation
00643 Styrene degradation
00930 Caprolactam degradation
00363 Bisphenol degradation
00626 Naphthalene degradation
00624 Polycyclic aromatic hydrocarbon degradation
00980 Metabolism of xenobiotics by cytochrome P450
00982 Drug metabolism - cytochrome P450
00983 Drug metabolism - other enzymes

1.12 Reaction module maps

01210 2-Oxocarboxylic acid metabolism

1.13 Chemical structure transformation maps

2. Genetic Information Processing

2.1 Transcription

03020 RNA polymerase
03022 Basal transcription factors
03040 Spliceosome

2.2 Translation

03010 Ribosome
00970 Aminoacyl-tRNA biosynthesis
03013 RNA transport
03015 mRNA surveillance pathway
03008 Ribosome biogenesis in eukaryotes

2.3 Folding, sorting and degradation

03060 Protein export
04141 Protein processing in endoplasmic reticulum
04130 SNARE interactions in vesicular transport
04120 Ubiquitin mediated proteolysis
04122 Sulfur relay system
03050 Proteasome
03018 RNA degradation

2.4 Replication and repair

03030 DNA replication
03410 Base excision repair
03420 Nucleotide excision repair
03430 Mismatch repair
03440 Homologous recombination
03450 Non-homologous end-joining

3. Environmental Information Processing

3.1 Membrane transport

02010 ABC transporters
03070 Bacterial secretion system

3.2 Signal transduction

02020 Two-component system
04010 MAPK signaling pathway
04013 MAPK signaling pathway - fly
04011 MAPK signaling pathway - yeast
04310 Wnt signaling pathway
04020 Calcium signaling pathway
04070 Phosphatidylinositol signaling system
04075 Plant hormone signal transduction

3.3 Signaling molecules and interaction

4. Cellular Processes

4.1 Transport and catabolism

04144 Endocytosis
04140 Regulation of autophagy

4.2 Cell motility

04810 Regulation of actin cytoskeleton

4.3 Cell growth and death

04110 Cell cycle
04114 Oocyte meiosis