The genome data are free for scientific use when it has been published (with cite information when this happen). Re-distribution and re-package of these data was not allowed without permission. These data may contain errors, please feedback us when you find errors by email to Dr. Qiang Xu at xuqiang@mail.hzau.edu.cn. And we keep continuous update on the genome version.

    Cite:Chenqiao Zhu#, Xiongjie Zheng#, Yue Huang# et al. Genome sequencing and CRISPR/Cas9 gene editing of      an early flowering mini citrus (Fortunella hindsii). Plant Biotechnology Journal , 2019,     doi: 10.1111/pbi.13132

    Assemblies in FASTA format

• GJ.contig.fa.tar.gz (Contig sequences)

    Annotation files

• GJ.gene.model.gff3.tar.gz (Gene annotation in GFF3 format for contig sequence)
• GJ.gene.fa.tar.gz (Nucleotide sequences of all genes)
• GJ.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
• GJ.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
• GJ.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)

    Cite:Lun Wang# et al. Genome of wild mandarin and domestication history of mandarin. Molecular Plant, 2018,      doi:https://doi.org/10.1016/j.molp.2018.06.001

    Assemblies in FASTA format

• MSYJ.fa.tar.gz (Pseudomolecule Sequences)

    Annotation files

• MSYJ.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
• MSYJ.gene.fa.tar.gz (Nucleotide sequences of all genes)
• MSYJ.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
• MSYJ.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
• MSYJ.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)

    Cite:Xia Wang#, Yuantao Xu#, Siqi Zhang#, Li Cao# et al. Genomic analyses of primitive, wild and cultivated citrus     provide insights into asexual reproduction. Nature Genetics, 2017, doi:10.1038/ng.3839

    Assemblies in FASTA format

• HWB.chromosome.fa.tar.gz (Pseudomolecule Sequences)
• HWB.scaffold.fa.tar.gz (Superscaffold Sequences)

    Annotation files

• HWB.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
• HWB.gene.fa.tar.gz (Nucleotide sequences of all genes)
• HWB.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
• HWB.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
• HWB.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)

    Cite:Xia Wang#, Yuantao Xu#, Siqi Zhang#, Li Cao# et al. Genomic analyses of primitive, wild and cultivated citrus     provide insights into asexual reproduction. Nature Genetics, 2017, doi:10.1038/ng.3839

    Assemblies in FASTA format

• XJC.scaffold.fa.tar.gz (Superscaffold Sequences)

    Annotation files

• XJC.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
• XJC.gene.fa.tar.gz (Nucleotide sequences of all genes)
• XJC.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
• XJC.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
• XJC.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)

    Cite:Xia Wang#, Yuantao Xu#, Siqi Zhang#, Li Cao# et al. Genomic analyses of primitive, wild and cultivated citrus     provide insights into asexual reproduction. Nature Genetics, 2017, doi:10.1038/ng.3839

    Assemblies in FASTA format

• XZ.scaffold.fa.tar.gz (Superscaffold Sequences)

    Annotation files

• XZ.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
• XZ.gene.fa.tar.gz (Nucleotide sequences of all genes)
• XZ.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
• XZ.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
• XZ.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)

    Cite:Xia Wang#, Yuantao Xu#, Siqi Zhang#, Li Cao# et al. Genomic analyses of primitive, wild and cultivated citrus     provide insights into asexual reproduction. Nature Genetics, 2017, doi:10.1038/ng.3839

    Assemblies in FASTA format

• HKC.scaffold.fa.tar.gz (Superscaffold Sequences)

    Annotation files

• HKC.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
• HKC.gene.fa.tar.gz (Nucleotide sequences of all genes)
• HKC.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
• HKC.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
• HKC.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)

    Cite:Qiang Xu#, Ling-Ling Chen#, Xiaoan Ruan#, Di-Jun Chen, Andan Zhu, et al. The draft genome of sweet     orange (Citrus sinensis). Nat Genet. 2013 45(1):59-66.

    Assemblies in FASTA format

• csi.chromosome.fa.tar.gz (Pseudomolecule Sequences)
• csi.chromosome.masked.fa.tar.gz (Pseudomolecule Sequences, RepeatMasked)
• csi.scaffold.fa.tar.gz (Superscaffold Sequences)
• csi.scaffold.masked.fa.tar.gz (Superscaffold Sequences, RepeatMasked)

    Genome Annotation of Citrus sinensis

• csi.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
• csi.gene.fa.tar.gz (Nucleotide sequences of all genes)
• csi.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
• csi.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
• csi.exon.fa.tar.gz (Nucleotide sequences of all exon sequences)
• csi.intron.fa.tar.gz (Nucleotide sequences of all intron sequences)
• csi.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)

    Genome Resequencing Data

• mandarin1.tar.bz2 (Mandarin1 Resequencing Data)
• mandarin2.tar.bz2 (Mandarin2 Resequencing Data)
• mandarin3.tar.bz2 (Mandarin3 Resequencing Data)
• pummelo1.tar.bz2 (Pummelo1 Resequencing Data)
• pummelo2.tar.bz2 (Pummelo2 Resequencing Data)
• pummelo3.tar.bz2 (Pummelo3 Resequencing Data)