Downloads
The genome data are free for scientific use when it has been published (with cite information when this happen). Re-distribution and re-package of these data was not allowed without permission. These data may contain errors, please feedback us when you find errors by email to Dr. Qiang Xu at xuqiang@mail.hzau.edu.cn. And we keep continuous update on the genome version.
Cite:Yue Huang#, Yuantao Xu# et al. Genome of a citrus rootstock and global DNA demethylation caused by heterografting. Horticulture Research, 2021, doi: https://doi.org/10.1038/s41438-021-00505-2
Assemblies in FASTA format
- ZK.chromosome.fa.tar.gz (Pseudomolecule Sequences)
Annotation files
- ZK.gene.model.gff3.tar.gz (Gene annotation in GFF3 format)
- ZK.gene.fa.tar.gz (Nucleotide sequences of all genes)
- ZK.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
- ZK.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
- ZK.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)
Cite:Chenqiao Zhu#, Xiongjie Zheng#, Yue Huang# et al. Genome sequencing and CRISPR/Cas9 gene editing of an early flowering mini citrus (Fortunella hindsii). Plant Biotechnology Journal , 2019, doi: 10.1111/pbi.13132
Assemblies in FASTA format
- GJ.contig.fa.tar.gz (Contig sequences)
Annotation files
- GJ.gene.model.gff3.tar.gz (Gene annotation in GFF3 format for contig sequence)
- GJ.gene.fa.tar.gz (Nucleotide sequences of all genes)
- GJ.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
- GJ.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
- GJ.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)
Cite:Lun Wang# et al. Genome of wild mandarin and domestication history of mandarin. Molecular Plant, 2018, doi:https://doi.org/10.1016/j.molp.2018.06.001
Assemblies in FASTA format
- MSYJ.fa.tar.gz (Pseudomolecule Sequences)
Annotation files
- MSYJ.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
- MSYJ.gene.fa.tar.gz (Nucleotide sequences of all genes)
- MSYJ.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
- MSYJ.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
- MSYJ.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)
Cite:Xia Wang#, Yuantao Xu#, Siqi Zhang#, Li Cao# et al. Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction. Nature Genetics, 2017, doi:10.1038/ng.3839
Assemblies in FASTA format
- HWB.chromosome.fa.tar.gz (Pseudomolecule Sequences)
- HWB.scaffold.fa.tar.gz (Superscaffold Sequences)
Annotation files
- HWB.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
- HWB.gene.fa.tar.gz (Nucleotide sequences of all genes)
- HWB.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
- HWB.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
- HWB.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)
Genome of Papeda (Citrus ichangensis) Status: draft, version1
Assemblies in FASTA format
- XJC.scaffold.fa.tar.gz (Superscaffold Sequences)
Annotation files
- XJC.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
- XJC.gene.fa.tar.gz (Nucleotide sequences of all genes)
- XJC.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
- XJC.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
- XJC.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)
Genome of Citron (Citrus medica) Status: draft, version1
Assemblies in FASTA format
- XZ.scaffold.fa.tar.gz (Superscaffold Sequences)
Annotation files
- XZ.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
- XZ.gene.fa.tar.gz (Nucleotide sequences of all genes)
- XZ.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
- XZ.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
- XZ.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)
Genome of Chinese Box Orange, a primitive citrus (Atlantia buxifolia) Status: draft, version1
Assemblies in FASTA format
- HKC.scaffold.fa.tar.gz (Superscaffold Sequences)
Annotation files
- HKC.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
- HKC.gene.fa.tar.gz (Nucleotide sequences of all genes)
- HKC.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
- HKC.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
- HKC.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)
Cite:Qiang Xu#, Ling-Ling Chen#, Xiaoan Ruan#, Di-Jun Chen, Andan Zhu, et al. The draft genome of sweet orange (Citrus sinensis). Nat Genet. 2013 45(1):59-66.
Assemblies in FASTA format
- csi.chromosome.fa.tar.gz (Pseudomolecule Sequences)
- csi.chromosome.masked.fa.tar.gz (Pseudomolecule Sequences, RepeatMasked)
- csi.scaffold.fa.tar.gz (Superscaffold Sequences)
- csi.scaffold.masked.fa.tar.gz (Superscaffold Sequences, RepeatMasked)
Genome Annotation of Citrus sinensis
- csi.gene.models.gff3.tar.gz (Gene annotation in GFF3 format)
- csi.gene.fa.tar.gz (Nucleotide sequences of all genes)
- csi.CDS.fa.tar.gz (Nucleotide sequences of coding sequences, i.e. no introns and no UTRs)
- csi.cDNA.fa.tar.gz (Nucleotide sequences of all transcript sequences, UTRs+CDS)
- csi.exon.fa.tar.gz (Nucleotide sequences of all exon sequences)
- csi.intron.fa.tar.gz (Nucleotide sequences of all intron sequences)
- csi.peptide.fa.tar.gz (Amino acid sequences corresponding to all gene coding sequences)
Genome Resequencing Data
- mandarin1.tar.bz2 (Mandarin1 Resequencing Data)
- mandarin2.tar.bz2 (Mandarin2 Resequencing Data)
- mandarin3.tar.bz2 (Mandarin3 Resequencing Data)
- pummelo1.tar.bz2 (Pummelo1 Resequencing Data)
- pummelo2.tar.bz2 (Pummelo2 Resequencing Data)
- pummelo3.tar.bz2 (Pummelo3 Resequencing Data)
TCPS: a high acid orange from Hunan Province in South China
BTC: a low acid orange cutivar 'BintTangCheng' from South China
UKXC: a local variety from South China
NHE: a cutivar of navel orange
NW: a late mature mutant of navel orange
Assemblies in FASTA format
- BTC.chromosome.fa.gz (Pseudomolecule Sequences)
- MSYJ.fa.tar.gz (Pseudomolecule Sequences)
- NHE.chromosome.fa.gz (Pseudomolecule Sequences)
- TCPS.chromosome.fasta.gz (Pseudomolecule Sequences)
- NW.chromosome.fasta.gz (Pseudomolecule Sequences)
- HXC.chromosome.fa.gz (Pseudomolecule Sequences)
Assemblies in FASTA format
- SWO_v3.tar.gz (Pseudomolecule Sequences)
Assemblies in FASTA format
- swo_v4.tar.gz (Pseudomolecule Sequences)
These data may contain errors, we keep continuous update on the genome version in future. We request that you notify us if use our data for genomic analysis so that we can provide you the most recently annotated yet not-open version. If any problem on the usage of these data, please contact Dr. Qiang Xu at xuqiang@mail.hzau.edu.cn and Huang Yue at yilunhuangyue@webmail.hzau.edu.cn.